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    PLEASE NOTE: This document applies to v0.7 version and not to the latest stable release v1.9

    Upgrades

    This guide will walk you through the manual steps to upgrade the software in a Rook cluster from one version to the next. Rook is a distributed software system and therefore there are multiple components to individually upgrade in the sequence defined in this guide. After each component is upgraded, it is important to verify that the cluster returns to a healthy and fully functional state.

    This guide is just the beginning of upgrade support in Rook. The goal is to provide prescriptive guidance and knowledge on how to upgrade a live Rook cluster and we hope to get valuable feedback from the community that will be incorporated into an automated upgrade solution by the Rook operator.

    We welcome feedback and opening issues!

    Considerations

    With this manual upgrade guide, there are a few notes to consider:

    • WARNING: Upgrading a Rook cluster is a manual process in its very early stages. There may be unexpected issues or obstacles that damage the integrity and health of your storage cluster, including data loss. Only proceed with this guide if you are comfortable with that.
    • Rook is still in an alpha state. Migrations and general support for breaking changes across versions are not supported or covered in this guide.
    • This guide assumes that your Rook operator and its agents are running in the rook-system namespace. It also assumes that your Rook cluster is in the rook namespace. If any of these components is in a different namespace, search/replace all instances of -n rook-system and -n rook in this guide with -n <your namespace>.

    Prerequisites

    In order to successfully upgrade a Rook cluster, the following prerequisites must be met:

    • The cluster should be in a healthy state with full functionality. Review the health verification section in order to verify your cluster is in a good starting state.
    • dataDirHostPath must be set in your Cluster spec. This persists metadata on host nodes, enabling pods to be terminated during the upgrade and for new pods to be created in their place. More details about dataDirHostPath can be found in the Cluster CRD readme.
    • All pods consuming Rook storage should be created, running, and in a steady state. No Rook persistent volumes should be in the act of being created or deleted.

    The minimal sample Cluster spec that will be used in this guide can be found below (note that the specific configuration may not be applicable to all environments):

    apiVersion: v1
kind: Namespace
metadata:
  name: rook
---
apiVersion: rook.io/v1alpha1
kind: Cluster
metadata:
  name: rook
  namespace: rook
spec:
  dataDirHostPath: /var/lib/rook
  storage:
    useAllNodes: true
    useAllDevices: true
    storeConfig:
      storeType: bluestore
      databaseSizeMB: 1024
      journalSizeMB: 1024

    Health Verification

    Before we begin the upgrade process, let’s first review some ways that you can verify the health of your cluster, ensuring that the upgrade is going smoothly after each step. Most of the health verification checks for your cluster during the upgrade process can be performed with the Rook toolbox. For more information about how to run the toolbox, please visit the Rook toolbox readme.

    Pods all Running

    In a healthy Rook cluster, the operator, the agents and all Rook namespace pods should be in the Running state and have few, if any, pod restarts. To verify this, run the following commands:

    kubectl -n rook-system get pods
kubectl -n rook get pod

    If pods aren’t running or are restarting due to crashes, you can get more information with kubectl describe pod and kubectl logs for the affected pods.

    Status Output

    The Rook toolbox contains the rookctl command line tool that can give you status details of the cluster with the rookctl status command. Let’s look at some sample output and review some of the details:

    > kubectl -n rook exec -it rook-tools -- rookctl status
OVERALL STATUS: OK

USAGE:
TOTAL       USED        DATA         AVAILABLE
26.62 GiB   12.25 GiB   252.76 MiB   14.37 GiB

MONITORS:
NAME             ADDRESS             IN QUORUM   STATUS
rook-ceph-mon2   10.3.0.15:6790/0    true        OK
rook-ceph-mon0   10.3.0.129:6790/0   true        OK
rook-ceph-mon1   10.3.0.218:6790/0   true        OK

MGRs:
NAME             STATUS
rook-ceph-mgr0   Active

OSDs:
TOTAL     UP        IN        FULL      NEAR FULL
6         6         6         false     false

PLACEMENT GROUPS (900 total):
STATE          COUNT
active+clean   900

    In the output above, note the following indications that the cluster is in a healthy state:

    • Overall status: The overall cluster status is OK and there are no warning or error status messages displayed.
    • Monitors: All of the monitors are in quorum and have individual status of OK.
    • OSDs: All OSDs are UP and IN.
    • MGRs: All Ceph managers are in the Active state.
    • Placement groups: All PGs are in the active+clean state.

    If your rookctl status output has deviations from the general good health described above, there may be an issue that needs to be investigated further.

    Pod Version

    The version of a specific pod in the Rook cluster can be verified in its pod spec output. For example, for the monitor pod mon0, we can verify the version it is running with the below commands:

    MON0_POD_NAME=$(kubectl -n rook get pod -l mon=rook-ceph-mon0 -o jsonpath='{.items[0].metadata.name}')
kubectl -n rook get pod ${MON0_POD_NAME} -o jsonpath='{.spec.containers[0].image}'

    All Pods Status and Version

    The status and version of all Rook pods can be collected all at once with the following commands:

    kubectl -n rook-system get pod -o jsonpath='{range .items[*]}{.metadata.name}{"\n\t"}{.status.phase}{"\t"}{.spec.containers[0].image}{"\n"}{end}'
kubectl -n rook get pod -o jsonpath='{range .items[*]}{.metadata.name}{"\n\t"}{.status.phase}{"\t"}{.spec.containers[0].image}{"\n"}{end}'

    Rook Volume Health

    Any pod that is using a Rook volume should also remain healthy:

    • The pod should be in the Running state with no restarts
    • There shouldn’t be any errors in its logs
    • The pod should still be able to read and write to the attached Rook volume.

    Upgrade Process

    The general flow of the upgrade process will be to upgrade the version of a Rook pod, verify the pod is running with the new version, then verify that the overall cluster health is still in a good state.

    In this guide, we will be upgrading a live Rook cluster running v0.6.2 to the next available version of v0.7.1. Let’s get started!

    Pre-Upgrade Steps

    Before we start the operator upgrade, we need to update a ConfigMap that has been renamed in v0.7.

    Save the following yaml as crush.yaml:

    apiVersion: v1
kind: ConfigMap
metadata:
  name: rook-crush-config
  namespace: rook
data:
  initialCrushMapCreated: "1"

    Create the ConfigMap:

    kubectl create -f crush.yaml

    Agents

    The Rook agents are deployed by the operator to run on every node. They are in charge of handling all operations related to the consumption of storage from the cluster. The agents are deployed and managed by a Kubernetes daemonset. Since the agents are stateless, the simplest way to update them is by deleting them and allowing the operator to create them again.

    Delete the agent daemonset:

    kubectl -n rook-system delete daemonset rook-agent

    Now when the operator is updated, the agent daemonset will automatically be created again with the new version.

    Operator

    The Rook operator is the management brains of the cluster, so it should be upgraded first before other components. In the event that the new version requires a migration of metadata or config, the operator is the one that would understand how to perform that migration.

    The operator is managed by a Kubernetes deployment, so in order to upgrade the version of the operator pod, we will need to edit the image version of the pod template in the deployment spec. This can be done with the following command:

    kubectl -n rook-system set image deployment/rook-operator rook-operator=rook/rook:v0.7.1

    Once the command is executed, Kubernetes will begin the flow of the deployment updating the operator pod.

    v0.6.2 Operator Cleanup

    Delete the following ConfigMap that is no longer needed since it was created with a new name in a previous step.

    kubectl -n rook delete configmap crush-config

    Operator Health Verification

    To verify the operator pod is Running and using the new version of rook/rook:v0.7.1, use the following commands:

    OPERATOR_POD_NAME=$(kubectl -n rook-system get pods -l app=rook-operator -o jsonpath='{.items[0].metadata.name}')
kubectl -n rook-system get pod ${OPERATOR_POD_NAME} -o jsonpath='{.status.phase}{"\n"}{.spec.containers[0].image}{"\n"}'

    Once you’ve verified the operator is Running and on the new version, verify the health of the cluster is still OK. Instructions for verifying cluster health can be found in the health verification section.

    Possible Issue: PGs unknown

    After upgrading the operator, the placement groups may show as status unknown. If you see this, go to the section on upgrading OSDs. Upgrading the OSDs will resolve this issue.

    kubectl -n rook exec -it rook-tools -- ceph status
...
    pgs:     100.000% pgs unknown
             100 unknown

    Toolbox

    The toolbox pod runs the tools we will use during the upgrade for cluster status. The toolbox is not expected to contain any state, so we will delete the old pod and start the new toolbox. You will need to either create the toolbox using the yaml in the release-0.7 branch or simply set the version of the container to rook/rook:v0.7.1 before creating the toolbox.

    kubectl -n rook delete pod rook-tools

    After verifying the old tools pod has terminated, start the new toolbox.

    kubectl create -f rook-tools.yaml

    API

    Similar to the operator, the Rook API pod is managed by a Kubernetes deployment. In order to upgrade the version of the api pod, we will need to edit the image version of the pod template in the deployment spec as well as add two environment variables. Begin editing the deployment with:

    kubectl -n rook edit deployment rook-api

    First update the container image version

            image: rook/rook:v0.7.1

    Now add the two new environment variables, ensuring that the spacing is consistent with other variables.

            - name: POD_NAME
          valueFrom:
            fieldRef:
              apiVersion: v1
              fieldPath: metadata.name
        - name: POD_NAMESPACE
          valueFrom:
            fieldRef:
              apiVersion: v1
              fieldPath: metadata.namespace

    After updating the deployment, the old rook-api pod should terminate a new one will start using the new version. We can verify the new pod is in the Running state and using the new version with these commands:

    API_POD_NAME=$(kubectl -n rook get pod -l app=rook-api -o jsonpath='{.items[0].metadata.name}')
kubectl -n rook get pod ${API_POD_NAME} -o jsonpath='{.status.phase}{"\n"}{.spec.containers[0].image}{"\n"}'

    Remember to verify the cluster health using the instructions found in the health verification section.

    Monitors

    There are multiple monitor pods to upgrade and they are each individually managed by their own replica set. For each monitor’s replica set, you will need to update the pod template spec’s image version field to rook/rook:v0.7.1. For example, we can update the replica set for mon0 with:

    kubectl -n rook set image replicaset/rook-ceph-mon0 rook-ceph-mon=rook/rook:v0.7.1

    Once the replica set has been updated, we need to manually terminate the old pod which will trigger the replica set to create a new pod using the new version.

    MON0_POD_NAME=$(kubectl -n rook get pod -l mon=rook-ceph-mon0 -o jsonpath='{.items[0].metadata.name}')
kubectl -n rook delete pod ${MON0_POD_NAME}

    After the new monitor pod comes up, we can verify that it’s in the Running state and on the new version:

    MON0_POD_NAME=$(kubectl -n rook get pod -l mon=rook-ceph-mon0 -o jsonpath='{.items[0].metadata.name}')
kubectl -n rook get pod ${MON0_POD_NAME} -o jsonpath='{.status.phase}{"\n"}{.spec.containers[0].image}{"\n"}'

    At this point, it’s very important to ensure that all monitors are OK and in quorum. Refer to the status output section for instructions. If all of the monitors (and the cluster health overall) look good, then we can move on and repeat the same upgrade steps for the next monitor until all are completed.

    NOTE: It is possible while upgrading your monitor pods that the operator will find them out of quorum and immediately replace them with a new monitor, such as mon0 getting replaced by mon3. This is okay as long as the cluster health looks good and all monitors eventually reach quorum again.

    Object Storage Daemons (OSDs)

    The OSD pods can be managed in two different ways, depending on how you specified your storage configuration in your Cluster spec.

    • Use all nodes: all storage nodes in the cluster will be managed by a single daemon set. Only the one daemon set will need to be edited to update the image version, then each OSD pod will need to be deleted so that a new pod will be created by the daemon set to take its place.
    • Specify individual nodes: each storage node specified in the cluster spec will be managed by its own individual replica set. Each of these replica sets will need to be edited to update the image version, then each OSD pod will need to be deleted so its replica set will start a new pod on the new version to replace it.

    In this example, we are going to walk through the case where useAllNodes: true was set in the cluster spec, so there will be a single daemon set managing all the OSD pods.

    In addition to updating the version of the container, we will need to add a new environment variable for the uid of the cluster. First, we will look up the value of the cluster uid that is required for the new variable.

    kubectl -n rook get cluster rook -o jsonpath='{.metadata.uid}'
6a4d0134-1800-11e8-b483-08002732be0b

    Now let’s edit either the single OSD daemonset or every OSD replicaset (depending on how the OSDs were deployed).

    # If using a daemonset for all nodes
kubectl -n rook edit daemonset rook-ceph-osd

# If using a replicaset for specific nodes, edit each one by one
kubectl -n rook edit replicaset rook-ceph-osd-<node>

    Add two new lines next to other environment variables, replacing the example value with your cluster uid:

            - name: ROOK_CLUSTER_ID
          value: <your_uid>

    Before exiting the editor, also update the version of the container.

            image: rook/rook:v0.7.1

    Once the daemon set is updated, we can begin deleting each OSD pod one at a time and verifying a new one comes up to replace it that is running the new version. After each pod, the cluster health and OSD status should remain or return to an okay state as described in the health verification section. To get the names of all the OSD pods, the following can be used:

    kubectl -n rook get pod -l app=rook-ceph-osd -o jsonpath='{range .items[*]}{.metadata.name}{"\n"}{end}'

    Below is an example of deleting just one of the OSD pods (note that the names of your OSD pods will be different):

    kubectl -n rook delete pod rook-ceph-osd-kcj8f

    The status and version for all OSD pods can be collected with the following command:

    kubectl -n rook get pod -l app=rook-ceph-osd -o jsonpath='{range .items[*]}{.metadata.name}{" "}{.status.phase}{" "}{.spec.containers[0].image}{"\n"}{end}'

    Remember after each OSD pod to verify the cluster health using the instructions found in the health verification section.

    Ceph Manager

    Similar to the Rook operator, the Ceph manager pods are managed by a deployment. We will edit the deployment to use the new image version of rook/rook:v0.7.1:

    kubectl -n rook set image deploy/rook-ceph-mgr0 rook-ceph-mgr0=rook/rook:v0.7.1
kubectl -n rook set image deploy/rook-ceph-mgr1 rook-ceph-mgr1=rook/rook:v0.7.1

    To verify that the manager pod is Running and on the new version, use the following:

    kubectl -n rook get pod -l app=rook-ceph-mgr -o jsonpath='{range .items[*]}{.metadata.name}{" "}{.status.phase}{" "}{.spec.containers[0].image}{"\n"}{end}'

    Optional Components

    If you have optionally installed either object storage or a shared file system in your Rook cluster, the sections below will provide guidance on how to update them as well. They are both managed by deployments, which we have already covered in this guide, so the instructions will be brief.

    Object Storage (RGW)

    If you have object storage installed, first edit the RGW deployment to use the new image version of rook/rook:v0.7.1:

    kubectl -n rook set image deploy/rook-ceph-rgw-my-store rook-ceph-rgw-my-store=rook/rook:v0.7.1

    To verify that the RGW pod is Running and on the new version, use the following:

    kubectl -n rook get pod -l app=rook-ceph-rgw -o jsonpath='{range .items[*]}{.metadata.name}{" "}{.status.phase}{" "}{.spec.containers[0].image}{"\n"}{end}'

    Shared File System (MDS)

    If you have a shared file system installed, first edit the MDS deployment to use the new image version of rook/rook:v0.7.1:

    kubectl -n rook set image deploy/rook-ceph-mds-myfs rook-ceph-mds-myfs=rook/rook:v0.7.1

    To verify that the MDS pod is Running and on the new version, use the following:

    kubectl -n rook get pod -l app=rook-ceph-mds -o jsonpath='{range .items[*]}{.metadata.name}{" "}{.status.phase}{" "}{.spec.containers[0].image}{"\n"}{end}'

    Completion

    At this point, your Rook cluster should be fully upgraded to running version rook/rook:v0.7.1 and the cluster should be healthy according to the steps in the health verification section.

    Upgrading Kubernetes

    Rook cluster installations on Kubernetes prior to version 1.7.x, use ThirdPartyResource that have been deprecated as of 1.7 and removed in 1.8. If upgrading your Kubernetes cluster Rook TPRs have to be migrated to CustomResourceDefinition (CRD) following Kubernetes documentation. Rook TPRs that require migration during upgrade are:

    • Cluster
    • Pool
    • ObjectStore
    • Filesystem
    • VolumeAttachment